Introduction
The hepatitis C virus (HCV), formerly known as 'non-A non-B' hepatitis virus,
was identified in 1989. This blood-borne virus is endemic worldwide, with an estimated 170
million persons infected, representing approximately 3% of the world population. The estimated
prevalence of HCV infection in Switzerland is ranging from 0.7 to 1% of the general population.
Long-term morbidity associated with persistent HCV infection includes the development of cirrhosis and primary liver cancer: these long-term sequelae of HCV infection are the primary indication to liver transplantation in Switzerland and many other Western countries.
The Swiss Hepatitis C Cohort Study (SCCS) was established in 2000 as a joint effort between the
Swiss Group of Experts in Viral Hepatitis and the Swiss Association for the Study of the Liver.
In the opinion of the founding members, large population-based cohort studies were (and still are today) considered a very important tool to confirm or refute working hypotheses on the natural course of chronic hepatitis C and on HCV pathology. The creation of the SCCS was also encouraged by the success story of a sister cohort, the Swiss human immunodeficiency virus cohort, based on a similar concept and structure. In keeping with this, the long-term goals of the SCCS are (1) to set up an infrastructure and investigative network fostering clinical and biomedical research on the natural history of HCV infection and (2) to optimize and standardize the management and treatment of HCV-infected patients.
The SCCS is meant to add information on factors that shape progression of HCV infection, thus informing future therapeutic decisions and predictions of the burden of HCV-related diseases at the population level, as well as supplementing epidemiological data collected by the mandatory national surveillance system at the Swiss Federal Office of Public Health. Ethical approval for data and clinical sample collection has been obtained from the 8 participating hospitals' ethics committees since the very inception of the study.
The patients' recruitment began in September 2000, and continues to this very day. As of July 31, 2015, as many as 4,722 anti-HCV-positive persons have been enrolled. The SCCS startup funding came from the Swiss Group of Experts in Viral Hepatitis. From April 2001 to November 2009 and again from January 2014 until now, the financial support of the core structure has been largely provided by the Swiss National Science Foundation. Additional sources of funding, for both the core structure and the scientific projects, have been provided over the years by several public and private institutions, including the Swiss Office for Education and Science and the European Commission.
In addition, the SCCS is also supported by the Swiss Hepatitis C Cohort Study Foundation.
Structure
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Clinical Centers
Clinical CoordinatorBaselProf. Markus Heim
Gastroenterologie Abteilung
Kantonsspital Basel
Petersgraben 4
4031 Basel
Tel. 061 265 33 62
Fax 061 265 23 50
Markus.Heim@unibas.chBernProf. Jean-François Dufour
Institut f. klin. Pharmakologie
Murtenstrasse 35
3010 Bern
Tel. 031 632 31 91
Fax 031 632 49 97
jf.dufour@ikp.unibe.chGenevaProf. Francesco Negro
Service de Gastroenterologie et d'Hépatologie
Hôpitaux Universitaires
Rue Gabrielle-Perret-Gentil 4
1 211 Genève 14
Tel. 022 372 93 40
Fax 022 372 93 66
Francesco.Negro@hcuge.chLausanneProf. Darius Moradpour
Division de Gastroentérologie et d'Hépatologie
Centre Hospitalier Universitaire Vaudois
Rue du Bugnon 44
1011 Lausanne
Tel. 021 314 47 14
Fax 021 314 47 18
Darius.Moradpour@chuv.chNeuchâtelProf. Raffaele Malinverni
Hôpital Pourtalès
2002 Neuchâtel
Switzerland
Tel. 032 713 3589
Fax 032 713 5832
Raffaele.Malinverni@ne.chSt. GallenDr. David Semela
Fachbereich Gastroenterologie
Kantonsspital
9007 St. Gallen
Tel. 071 494 10 64
Fax 071 494 28 62
David.Semela@kssg.chLuganoProf. Andreas Cerny
Epatocentro
Via Soldino 5
6900 Lugano
Tel. 091 960 85 03
Fax 091 960 87 18
andreas.cerny@bluewin.chZürichProf. Beat Müllhauptclose
Klinik für Gastroenterologie und Hepatologie
Universitätsspital
Rämistrasse 100
8091 Zürich
Tel. 044 255 25 53
Fax 044 255 89 51
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Laboratories
Laboratory Responsible PersonBaselDr. Hans Hirsch
Institut für Med. Mikrobiologie
der Universität Basel
Petersplatz 10
4003 Basel
Tel. 061 267 32 75
Fax 061 267 32 98
hans.hirsch@unibas.chBernDr. Meri Gorgievski
Fachbereich Virologie/Molekularbiologie
Friedbühlstrasse 51
3010 Bern
Tel. 031 632 35 62
Fax 031 632 49 66
meri.gorgievski@ifik.unibe.chGenevaProf. Laurent Kaiser
Laboratoire de virologie
Hôpitaux Universitaires de Genève
Rue Gabrielle-Perret-Gentil 4
1211 Genève 14
Tel. 022 372 40 96
Fax 022 372 49 97
laurent.kaiser@hcuge.chLausanneDr. Vincent Aubert
Service d'Immunologie et Allergie
Centre Hospitalier Universitaire Vaudois
BH 19-610
Rue du Bugnon 46
1011 Lausanne
Tel. 021 314 08 42
vincent.aubert@chuv.chNeuchâtel(see Lausanne)
St. GallenDr. Günter Dollenmaier
Institut für klin.Mikrobiol. u. Immunologie
Frohbergstr. 3
9001 St. Gallen
Tel. 071 494 37 11
Fax. 071 494 37 85
Guenter.Dollenmaier@zlmsg.chLuganoDr. Gladys Martinetti Lucchini
Servizio di Microbiologia
EOLAB
6500 Bellinzona
Tel. 091 811 17 35 or 091 811 17 11
gladys.martinettilucchini@eoc.chZürichDr. Elsbeth Probst-Muellerclose
Abt. für Klin. Immunologie
Universitätsspital
Häldeliweg 4
8044 Zürich
Tel. 044 255 25 53
Fax 044 255 12 11
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Data Center
Dr. Thomas Fabbroclose
Clinical Trial Unit
Universitätsspital Basel
Schanzenstrasse 55
4031 Basel
Tel. 031 632 87 15
Fax 031 632 49 97
Thomas.Fabbro@usb.ch -
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Scientific Committee
Dr. David Semela (Chairman)
Bereich Gastroenterologie und Hepatologie
Kantonsspital
Rorschacherstrasse 95
St. Gallen
Tel. 071 494 12 16
Fax 071 494 63 27
David.Semela@kssg.chProf. Darius Moradpour
Division de Gastroentérologie et d'Hépatologie
Centre Hospitalier Universitaire Vaudois
Rue du Bugnon 44
1011 Lausanne
Tel. 021 314 47 23
Fax 021 314 47 18
Darius.Moradpour@chuv.chProf. Francesco Negro
Services de Gastroentérologie et d’Hépatologie
et de Pathologie Clinique
Hôpitaux Universitaires
Rue Gabrielle-Perret-Gentil 4
1211 Genève 14
Tel. 022 372 93 40
Fax 022 372 93 66
Francesco.Negro@hcuge.chProf. Raffaele Malinverni
Hôpital Pourtalès
2002 Neuchâtel
Switzerland
Tel. 032 713 3589
Fax 032 713 5832
Raffaele.Malinverni@ne.chProf. Andreas Cerny
Clinica Luganese
Via Moncucco 10
6903 Lugano
Tel. 091 960 81 11
Fax 091 960 87 18
andreas.cerny@bluewin.chProf. Beat Müllhaupt
Abt. Gastroenterologie und Hepatologie
Dept. Innere Medizin
Universitätsspital
Rämistrasse 100
8091 Zürich
Tel. 044 255 25 53
Fax 044 255 89 51
beat.muellhaupt@usz.chDr. Meri Gorgievski
Fachbereich Virologie/Molekularbiologie
Friedbühlstrasse 51
3010 Bern
Tel. 031 632 35 62
Fax 031 632 49 66
meri.gorgievski@ifik.unibe.chProf. Markus Heim
Gastroenterologie Abteilung
Kantonsspital Basel
Petersgraben 4
4031 Basel
Tel. 061 265 33 62
Fax 061 265 23 50
Markus.Heim@unibas.chDr. Pierre-Yves Bochud
Service de Maladies Infectieuses
CHUV – Université de Lausanne
Rue du Bugnon 46
1011 Lausanne
Tel. 021 314 43 79
Fax 021 314 40 60
Pierre-Yves.Bochud@chuv.chPD Dr. Nasser Semmo
Hepatologie
Inselspital, Universitätsspital Bern
Murtenstrasse 35
3010 Bern
Tel. 031 632 35 69
Fax 031 632 49 97
nasser.semmo@insel.chDr. Thomas Fabbroclose
Clinical Trial Unit
Universitätsspital Basel
Schanzenstrasse 55
4031 Basel
Tel. 031 632 87 15
Fax 031 632 49 97
Thomas.Fabbro@usb.ch
Study Protocol & Documents
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Study Protocol & Documents
Clinical Study Protocol Version 2 (April 15, 2015)Informed Consent Form French (Geneva)Informed Consent Form English (Geneva)Standard Operating Procedure for blood sample collectionStandard Operating Procedure for data collection (German)Standard Operating Procedure for data collection (French)
Standard Operating Procedure for biosample request at Basel CTU
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Study population
Scientific Projects
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Guidelines for authors
I. INTRODUCTION
The Swiss Hepatitis C Cohort Study (SCCS) welcomes all research in the form of Scientific Nested Projects (SNP) involving the SCCS infrastructure.
Applicants are invited, before submitting a project, especially when this is requiring the use of biosamples, to verify the feasibility of the proposed work by contacting the Data Center at the e-mail address hcvBiosampleRequest@clinicaltrialunit.ch.
The corresponding SOP is detailed in the attached PDF file.II. SUBMISSION OF A RESEARCH PROJECT
1. General principlesAny use of the SCCS data for research purposes has to be submitted to the SCCS Scientific Committee. This should be done before initiating the project, to avoid duplication and potential conflicts. SNP must be reviewed by the SCCS Scientific Committee also when they are going to be submitted to the Swiss National Science Foundation (SNSF) for funding: in this case, the prior approval by the SCCS Scientific Committee is a prerequisite for submission to the SNSF. In case of SNP not necessitating funding or SNP already funded by sources other than the SNSF, the positive decision of the SCCS Scientific Committee is sufficient for starting the work. If a SNP is nested within another research project already financed by the SNSF, the SCCS Scientific Committee must have the possibility to read the grant previously submitted to the SNSF and have full knowledge of its relative decision.2. Who can submitSNPs may be submitted by all researchers who are formally involved and actively participate in the SCCS or – if not members of the SCCS - committed to actively collaborate with the SCCS.3. Deadline and addressesThere are no fixed deadlines for submission. However, whenever a request is planned to be submitted to the SNSF, it is strongly advised to request a prior approval from the SCCS Scientific Committee at least 4 (four) weeks before the deadlines established for grant applications to the SNSF (i.e. September 30 and March 31).4. Types of Proposals
All documents have to be submitted electronically (as pdf files)) to the Chairperson of the Scientific Board,
Dr David Semela, Bereich Gastroenterologie und Hepatologie, Kantonsspital, St. Gallen, e-mail: David.Semela@kssg.chIn order to simplify the procedure of application for research projects, the Scientific Committee supports the following types of SNP:5. Evaluation and decision process
Letter of Intent (LOI) (max. 3 pages) Full Proposal (with the detailed budget requirements, collaborations, other sources of funding)
4.1 Letter of IntentThe LOI has the role of providing the submitting investigators with a preliminary assessment of the feasibility and scientific merit of a project nested within the SCCS and that can be later submitted as a Full Proposal. The LOI will include a short general description of the research question, the rationale and the resources likely to be needed. Minimum requirements include: a short introduction with 1 - 5 key references the study objectives the study design a preliminary budget
4.2 Full ProposalThe detailed description of the study should concisely present all the information necessary to allow a complete assessment of the proposal. It must be typed on no more than 10 pages. The following information is required:
4.2.1 Abstract(max. one page)4.2.2 Research Plan4.2.2.1 State of the Artpresent state of knowledge in the area of the proposed research with key references objectives of the project in relation to state of knowledge
4.2.2.2 Own Research in the Fieldincluding relevant experience and a list of publications relevant background information on the other investigators
4.2.2.3 Detailed Research Plan (only pertinent items to be filled)the hypothesis to be tested study design, endpoints, inclusion/exclusion criteria investigations and tests to be performed in patients laboratory methods drug information (if applicable) follow-up evaluation; patient management issues ethical committee evaluation biostatistical methods
4.2.2.4 Significance of the ProjectThe scientific and practical significance of the proposed research
4.2.2.5 Time Frame for the ProjectThe research tasks to be performed within the credit and the duration of the projects should be explicitly mentioned.
4.2.3 Available Means and other sources of FundingIndicate infrastructure and manpower already available for the study Indicate what funds you expect to obtain from other sources
4.2.4 Detailed BudgetThe budget should include appropriate details as well as external funded expenses For personnel, the requested position(s) and duration should be justified by a description of the tasks The keys of the financial distribution between the different participating centers should be presented The budget of the study should take into the following costs: personnel, laboratory tests, specimen retrieval from the SCCS repositories (9 CHF per each sample), special tasks requested from the Data Center (data extraction and analysis), other expenses
4.2.5 Investigators and AuthorshipA proposal for authorship should be part of each submitted project. It is understood that they have all agreed to participate actively in the submitted proposal. For each project, the financial responsibility should be explicitly mentioned and the project should be approved by the chief of the unit / lab / etc. who is ultimately responsible for the advancement of the project.
The SCCS is listed as author in all papers made with the contribution of at least two centers, using the quote: *and the Swiss Hepatitis C Cohort Study Group*, followed by an index that refers to a footnote providing the full list of SCCS members.4.2.6 AttachmentsPlease attach whatever information you feel would help support the submission. Such information may include: a cover letter the curriculum vitae of the principal investigator an informed consent form/patients' information form for all clinical trials Case Record Forms for clinical trials approval of the sponsoring institution's and/or the university's ethics review board list of potential reviewers (positive and negative, with reasons to exclude some of them) statement concerning the dissemination of results (see paragraph 8).The SCCS Scientific Committee has to evaluate all submitted projects. The detailed procedure is decided internally by the Chairperson. The latter may appoint one or two external referees (including experts from abroad) in case of controversy among the internal members of the Scientific Committee about the decision to be taken. After the Scientific Committee has made its decision, this is notified by the Chairperson to the responsible investigator in a written and detailed form.6. Progress reports
Authors who do not agree with the rejection of a project can appeal to the Scientific Committee within one month of the decision with a letter detailing the reasons for the rebuttal. The SCCS Scientific Committee will decide whether a further evaluation is warranted, but the following decision – in this case – has to be considered as definitive.
A grant application to the SNSF requires a prior approval by the SCCS Scientific Committee: the latter approval must be submitted together with the application. In this case, it is understood that (i) a preapproval by the SCCS Scientific Committee by no means constitutes a guarantee that the SNP will be fully or partially accepted by the SNSF, and that (ii) the submitting investigator is fully responsible – from both the administrative and scientific point of view – of his/her project vis-à-vis the SNSF, and accepts to adhere to the guidelines established by this same institution concerning the grant allocation and subsequent evaluation.A copy of the scientific report of each SNP must be made available upon request to the SCCS Scientific Committee, who will include a summary of the most relevant results on the SCCS website. The SCCS Scientific Committee reserves the right to issue recommendations in case the scientific work does not proceed as planned.7. Special funding requirementsThe SCCS Scientific Committee reserves the right to modify the SNP budget concerning (i) the SCCS clinical samples retrieval, and (ii) the costs for involving the Data Center personnel (data extraction, analysis), if deemed insufficiently covered at the time of submission.8. Dissemination of resultsThe responsible investigator for each SNP has to state how he/she plans to disseminate the results of his research in a publicly available format (publication in scientific journal, thesis, communication at a scientific meeting), and this at the time of the initial submission of the SNP.
Publications
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Publications
Roelens M, Bertisch B, Moradpour D, Cerny A, Semmo N, Schmid P, Müllhaupt B, Clerc O, Semela D, Junker C, Negro F, Keiser O. All-cause mortality and causes of death in the Swiss Hepatitis C Cohort Study (SCCS). Open Forum Infect Dis 2020;7:ofaa308Bertisch B, Brezzi M, Negro F, Muellhaupt B, Ottiger C, Kuenzle-Heule P, Schmid P, Giudici F, Clerc O, Moriggia A, Marinucci F, Moradpour D, Keiser O, for the Swiss Hepatitis C Cohort Study. Very low hepatitis C viral loads in treatment-naïve persons: do they compromise hepatitis C antigen testing? Clin Infect Dis 2020;70:653-659About F, Bibert S, Jouanguy E, Nalpas B, Lorenzo L, Rattina V, Zarhrate M, Hanein S, Munteanu M, Müllhaupt B, Semela D, Semmo N, Casanova JL, Theodorou I, Sultanik P, Poynard T, Pol S, Bochud PY, Cobat A, Abel L; Swiss Hepatitis C Cohort Study Group; French ANRS HC EP 26 Genoscan Study Group. Identification of an endoglin variant associated with HCV-related liver fibrosis progression by next-generation sequencing. Front Genet 2019;10:1024Brezzi M, Bertisch B, Roelens M, Moradpour D, Terziroli Beretta-Piccoli B, Semmo N, Müllhaupt B, Semela D, Negro F, Keiser O. Impact of geographical origin on access to therapy and therapy outcomes among Swiss Hepatitis C Cohort Study participants. PloS One 2019;14:e0218706Terziroli Beretta-Piccoli B, Di Bartolomeo C, Deleonardi G, Grondona AG, Silvestri T, Tesei C, Melidona L, Cerny A, Mertens J, Semmo N, Semela D, Moradpour D, Mieli-Vergani G, Vergani D, Muratori L; Swiss Hepatitis C Cohort Study. Autoimmune liver serology before and after successful treatment of chronic hepatitis C by direct acting antiviral agents. J Autoimmun 2019;102:89-95Goossens N, de Vito C, Clément S, Mangia A, Cenderello G, Barrera F, Lampertico P, Coppola N, Zampino R, Stanzione M, Adinolfi LE, Wedemeyer H, Semmo N, Müllhaupt B, Semela D, Malinverni R, Moradpour D, Heim M, Trincucci G, Rubbia-Brandt L, Negro F. The effect of hepatitis B virus infection on steatosis in hepatitis C virus co-infected subjects: a multi-center study and systematic review. J Viral Hepatitis 2018;25:920-929Keiser O, Giudici F, Müllhaupt B, Dufour JF, Heim M, Malinverni R, Moradpour D, Bruggmann P, Semela D, Terziroli Beretta-Piccoli B, Brezzi M, Bertisch B, Estill J, Negro F, Spörri A. Trends in hepatitis C-related mortality in Switzerland. J Viral Hepatitis 2018;25:152-160Gauthiez E, Habfast-Robertson I, Rüeger S, Kutalik Z, Aubert V, Berg T, Cerny A, Gorgievski M, George J, Heim MH, Malinverni R, Moradpour D, Müllhaupt B, Negro F, Semela D, Semmo N, Villard J, Bibert S, Bochud PY. A systematic review and meta-analysis of HCV clearance. Liver Int 2017;37:1431-45Fischer J, Weber AN, Böhm S, Dickhöfer S, El Maadidi S, Deichsel D, Knop V, Klinker H, Möller B, Rasenack J, Wang L, Sharma M, Hinrichsen H, Spengler U, Buggisch P, Sarrazin C, Pawlita M, Waterboer T, Wiese M, Probst-Müller E, Malinverni R, Bochud PY, Gardiner C, O'Farrelly C, Berg T. Sex-specific effects of TLR9 promoter variants on spontaneous clearance of hepatitis C virus infection. Gut 2017;66:1829-1837Oussalah A, Avogbe PH, Guyot E, Chery C, Guéant-Rodriguez RM, Ganne-Carrié, Cobat A, Moradpour D, Nalpas B, Negro F, Poynard T, Pol S, Bochud PY, Abel L, Jeulin H, Schvoerer H, Chabi N, Amouzou E, Sanni A, Barraud H, Rouyer P, Josse P, Goffinet L, Jouve JL, Minello A, Bonithon-Kopp C, Thiefin G, Di Martino V, Doffoël M, Richou C, Raab JJ, Hillon P, Bronowicki JP. BRIP1 coding variants are associated with a high risk of hepatocellular carcinoma in patients with viral cirrhosis in Caucasians and Africans. Oncotarget 2016;8:62842-57Macé A, Tuke M, Beckmann JS, Lin L, Jacquemont S, Weedon MN, Reymond A, Kutalik Z. New quality measure for SNP array based CNV detection. Bioinformatics 2016 ;32:3298-3305Ulveling D, Le Clerc S, Cobat A, Labib T, Noirel J, Laville V, Coulonges C, Carpentier W, Nalpas B, Heim MH, Poynard T, Cerny A, Pol S, Bochud PY, Dabis F, Theodorou I, Lévy Y, Salmon D, Abel L, Dominguez S, Zagury JF; HEPAVIH ANRS CO13 Cohort Study Group.; Swiss Hepatitis C Cohort Study Group; French ANRS HC EP 26 Genoscan Study Group. A new 3p25 locus is associated with liver fibrosis progression in human immunodeficiency virus/hepatitis C virus-coinfected patients. Hepatology 2016;64:1462-1472Giudici F, Bertisch B, Negro F, Stirnimann G, Müllhaupt B, Moradpour D, Cerny A, Keiser O. Access to therapy and therapy outcomes in the Swiss Hepatitis C Cohort Study: a person-centered approach. J Viral Hepatitis 2016;23:697-707Zahnd C, Salazar-Vizcaya L, Dufour JF, Müllhaupt B, Wandeler G, Kouyos R, Estill J, Bertisch B, Rauch A, Keiser O; Swiss HIV; Swiss Hepatitis C Cohort Studies. Modelling the impact of deferring HCV treatment on liver-related complications in HIV coinfected men who have sex with men. J Hepatol 2016;65:26-32Buhler S, Giostra E, Gbame C, de Rham C, Mulhaupt B, Dufour JF, Majno P, Negro F, Bochud PY, Villard J. A significant effect of the KIR ligand HLA-C on fibrosis progression in chronic C hepatitis with or without liver transplantation. Liver Int 2015;36:1331-1339Bertisch B, Giudici F, Negro F, Moradpour D, Müllhaupt B, Moriggia A, Estill J, Keiser O, for the Swiss Hepatitis C Cohort Study. Characteristics of foreign-born patients in the Swiss Hepatitis C Cohort Study: implications for screening recommendations. Plos One 2016;11:e0155464Wang H, El Maadidi S, Fischer J, Grabski E, Dickhöfer S, Klimosch S, Flannery SM, Filomena A, Wolz OO, Schneiderhan-Marra N, Löffler MW, Wiese M, Pichulik T, Müelhaupt B, Semela D, Dufour JF, The East-German and Swiss Hepatitis C Virus Study Groups, Bochud PY, Bowie AG, Kalinke U, Berg T, Weber ANR. A frequent hypofunctional IRAK2 variant is associated with reduced spontaneous hepatitis C virus clearance. Hepatology 2015;62:1375-87Rüeger S, Bochud PY, Dufour JF, Müellhaupt B, Semela D, Heim MH, Moradpour D, Cerny A, Malinverni R, Booth DR, Suppiah V, George J, Argiro L, Halfon P, Bourlière M, Talal AH, Jacobson IM, Patin E, Nalpas B, Poynard T, Pol S, Abel L, Kutalik Z, Negro F, on behalf of the Swiss Hepatitis C Cohort Study Group. Impact of common risk factors of fibrosis progression in chronic hepatitis C. Gut 2015;64:1605-1615Bruggmann P, Richard JL, on behalf of the Swiss Hepatitis C Cohort Study Group. Birth year distribution in reported hepatitis C cases in Switzerland. Eur J Public Health 2015;25:141-3Terczyńska-Dyla E, Bibert S, Duong FH, Krol I, Jørgensen S, Collinet E, Kutalik Z, Aubert V, Cerny A, Kaiser L, Malinverni R, Mangia A, Moradpour D, Müllhaupt B, Negro F, Santoro R, Semela D, Semmo N; Swiss Hepatitis C Cohort Study Group, Heim MH, Bochud PY, Hartmann R. Reduced IFNλ4 activity is associated with improved HCV clearance and reduced expression of interferon-stimulated genes. Nat Commun 2014;5:5699Morard I, Clément S, Calmy A, Mangia A, Cerny A, De Gottardi A, Gorgievski M, Heim M, Malinverni R, Moradpour D, Mullhaupt B, Semela D, Pascarella S, Bochud P-Y, Negro F. Role of CCR5 genetic polymorphisms in clinical outcomes of hepatitis C. PLoS One 2014;9:e106424Hoggart CJ, Venturini G, Mangino M, Gomez F, Ascari G, Zhao JH, Teumer A, Winkler TW, Tšernikova N, Luan J, Mihailov E, Ehret GB, Zhang W, Lamparter D, Esko T, Macé A, Rüeger S, Bochud PY, Barcella M, Dauvilliers Y, Benyamin B, Evans DM, Hayward C, Lopez MF, Franke L, Russo A, Heid IM, Salvi E, Vendantam S, Arking DE, Boerwinkle E, Chambers JC, Fiorito G, Grallert H, Guarrera S, Homuth G, Huffman JE, Porteous D, Generation Scotland Consortium, The LifeLines Cohort study, The GIANT Consortium, Moradpour D, Iranzo A, Hebebrand J, Kemp JP, Lammers GJ, Heim MH, Martin NG, Montgomery GW, Peraita-Adrados R, Santamaria J, Negro F, Schmidt CO, Scott RA, Spector TD, Strauch K, Völzke H, Wareham NJ, Yuan W, Bell JT, Chakravarti A, Kooner JS, Peters A, Matullo G, Wallaschofski H, Whitfield JB, Paccaud F, Vollenweider P, Bergmann S, Beckmann JS, Tafti M, Hastie ND, Cusi D, Bochud M, Frayling TM, Metspalu A, Jarvelin MR, Scherag A, Davey Smith G, Borecki IB, Rousson V, Hirschhorn JN, Rivolta C, Loos RJF, Kutalik Z. Novel method identifies SNPs in 1 SLC2A10 and KCNK9 exhibiting 2 parent-of origin effect on body mass index. PLoS Gen 2014;10:e1004508Frei P, Leucht AK, Held U, Kofmehl R, Schmitt J, Mertens J, Rau M, Gerlach T, Negro F, Heim M, Moradpour D, Cerny A, Dufour JF, Müllhaupt B, Geier A. Elderly age is not a negative predictive factor for virological response to therapy with pegylated interferon-α and ribavirin in chronic hepatitis C virus patients. Liver Int 2013;34:551-557Bibert S, Roger T, Calandra T, Cerny A, Dufour JF, Gerlach T, Malinverni R, Moradpour D, Negro F, Müllhaupt B, Duong F, Bochud PY and the Swiss Hepatitis C Cohort Study. A novel genetic variation nearby IL28B improves clearance prediction and influences mRNA expression. J Exp Med 2013;210:1109-1116Lange CM, Miki D, Ochi H, Nischalke HD, Bojunga J, Bibert S, Morikawa K, Gouttenoire J, Cerny A, Dufour JF, Gorgievski-Hrisoho M, Heim M, Malinverni R, Müllhaupt B, Negro F, Semela D, Kutalik Z, Müller T, Spengler U, Berg T, Chayama K, Moradpour D, Bochud PY. Genetic analyses reveal a role for vitamin D insufficiency in HCV-associated hepatocellular carcinoma development. PLoS One 2013;8:e64053Lange CM, Bibert S, Dufour JF, Cerny A, Heim MH, Malinverni R, Müllhaupt B, Negro F, Semela D, Moradpour D, Kutalik Z, Bochud PY. Comparative genetic analyses point to HCP5 as susceptibility locus for HCV-associated hepatocellular carcinoma. J Hepatol 2013;59:504-509Rau M, Stickel F, Russmann S, Manser CN, Becker PP, Weisskopf M, Schmitt J, Dill MT, Dufour JF, Moradpour D, Semela D, Müllhaupt B, Geier A; Swiss Hepatitis C Cohort Study Group (SCCS). Impact of genetic SLC28 transporter and ITPA variants on ribavirin serum level, hemoglobin drop and therapeutic response in patients with HCV infection. J Hepatol 2013;58:669-675Kuske L, Mensen A, Müllhaupt B, Negro F, Semela D, Moradpour D, Malé PJ, Heim MH, Malinverni R, Cerny A, Dufour JF; Swiss Hepatitis C Cohort Study. Characteristics of patients with chronic hepatitis C who develop hepatocellular carcinoma. Swiss Med Wkly 2012;142:w13651Patin E, Kutalik Z, Guergnon J, Bibert S, Nalpas B, Jouanguy E, Munteanu M, Bousquet L, Argiro L, Halfon P, Boland A, Müllhaupt B, Semela D, Dufour JF, Heim MH, Moradpour D, Cerny A, Malinverni R, Hirsch H, Martinetti G, Suppiah V, Stewart G, Booth DR, George J, Casanova JL, Bréchot C, Rice CM, Talal AH, Jacobson IM, Bourlière M, Theodorou I, Poynard T, Negro F, Pol S, Bochud PY, Abel L; Swiss Hepatitis C Cohort Study Group; International Hepatitis C Genetics Consortium; French ANRS HC EP 26 Genoscan Study Group. Genome-wide association study identifies variants associated with progression of liver fibrosis from HCV infection. Gastroenterology 2012;143:1244-52.e1-12Lange CM, Bibert S, Kutalik Z, Burgisser P, Cerny A, Dufour JF, Geier A, Gerlach TJ, Heim MH, Malinverni R, Negro F, Regenass S, Badenhoop K, Bojunga J, Sarrazin C, Zeuzem S, Müller T, Berg T, Bochud PY, Moradpour D; Swiss Hepatitis C Cohort Study Group. A genetic validation study reveals a role of vitamin D metabolism in the response to interferon-alfa-based therapy of chronic hepatitis C. PLoS One 2012;7:e40159Baur K, Mertens JC, Schmitt J, Iwata R, Stieger B, Frei P, Seifert B, Ferrari HA, von Eckardstein A, Müllhaupt B, Geier A; the Swiss Hepatitis C Cohort Study Group. The vitamin D receptor gene bAt (CCA) haplotype impairs the response to pegylated-interferon/ribavirin-based therapy in chronic hepatitis C patients. Antivir Ther 2012;17:541-547Girardin F, Daali Y, Gex-Fabry M, Rebsamen M, Roux-Lombard P, Cerny A, Bihl F, Binek J, Moradpour D, Negro F, Desmeules J. Impact of LKM-1 antibodies on CYP2D6 activity in chronic HCV infected patients. J Viral Hepatitis 2012.Baur K, Mertens JC, Schmitt J, Iwata R, Stieger B, Eloranta JJ, Frei P, Stickel F, Dill MT, Seifert B, Bischoff Ferrari HA, von Eckardstein A, Bochud PY, Müllhaupt B, Geier A; the Swiss Hepatitis C Cohort Study Group. Combined effect of 25-OH vitamin D plasma levels and genetic Vitamin D Receptor (NR 1I1) variants on fibrosis progression rate in HCV patients. Liver Int 2012;32:635-643Bochud PY, Bibert S, Kutalik Z, Patin E, Guergnon J, Nalpas B, Goossens N, Kuske L, Müllhaupt B, Gerlach T, Heim M, Moradpour D, Cerny A, Malinverni R, Regenass S, Dollenmaier G, Hirsch H, Martinetti G, Gorgiewski M, Bourlière M, Poynard T, Theodorou I, Abel L, Pol S, Dufour JF, Negro F. IL28B alleles associated with poor HCV clearance are protective against liver necroinflammatory activity and fibrosis progression in patients infected with non-1 HCV genotypes. Hepatology 2012;55:384-94.Lange CM, Kutalik Z, Morikawa K, Bibert S, Cerny A, Dollenmaier G, Dufour JF, Gerlach TJ, Heim MH, Malinverni R, Müllhaupt B, Negro F, Moradpour D, Bochud PY. Serum ferritin levels are associated with a distinct phenotype of chronic hepatitis C poorly responding to interferon-a-based therapy. Hepatology 2012;55:1038-1047.Witteck A, Schmid P, Hensel-Koch K, Thurnheer MC, Bruggmann P, Vernazza P, Swiss Hepatitis C and HIV Cohort Studies. Management of hepatitis C virus (HCV) infection in drug substitution programs. Swiss Med Wkly 2011 May 27;141:w13193.Cai T, Dufour JF, Muellhaupt B, Gerlach T, Heim M, Moradpour D, Cerny A, Malinverni R, Kaddai V, Bochud M, Negro F, Bochud PY; On Behalf Of The Swiss Hepatitis C Cohort Study Group. Viral Genotype-Specific Role of PNPLA3, PPARG, MTTP and IL28B in Hepatitis C Virus-Associated Steatosis. J Hepatol 2011;55:529-35.Lange CM, Moradpour D, Doehring A, Lehr HA, Müllhaupt B, Bibert S, Bochud PY, Antonino AT, Pascual M, Farnik H, Shi Y, Bechstein WO, Moench C, Hansmann ML, Sarrazin C, Lötsch J, Zeuzem S, Hofmann WP. Impact of donor and recipient IL28B rs12979860 genotypes on hepatitis C virus liver graft reinfection. J Hepatol 2011;55:322-7.Iwata R, Baur K, Stieger B, Mertens JC, Daly AK, Frei P, Braun J, Vergopoulos A, Stickel F, Sabrane K, Martin IV, Schmitt J, Goetze O, Day CP, Müllhaupt B, Geier A; Swiss Hepatitis C Cohort Study Group. A common polymorphism in the ABCB11 gene is associated with advanced fibrosis in hepatitis C but not in non-alcoholic fatty liver disease. Clin Sci (Lond) 2011;120:287-96.Iwata R, Stieger B, Mertens JC, Müller T, Baur K, Frei P, Braun J, Vergopoulos A, Martin IV, Schmitt J, Goetze O, Bibert S, Bochud PY, Müllhaupt B, Berg T, Geier A; Swiss Hepatitis C Cohort Study Group. The role of bile acid retention and a common polymorphism in the ABCB11 gene as host factors affecting antiviral treatment response in chronic hepatitis C. J Viral Hepat 2011;18:768-78.Bruggmann P, Dampz M, Gerlach T, Kravecz L, Falcato L. Treatment outcome in relation to alcohol consumption during hepatitis C therapy: an analysis of the Swiss Hepatitis C Cohort Study. Drug Alcohol Depend 2010;110:167-71.Overbeck K, Dufour JF, Müllhaupt B, Helbling B, Borovicka J, Malinverni R,Heim M, Moradpour D, Cerny A, Rickenbach M, Negro F. Impact of international consensus guidelines on antiviral therapy of chronic hepatitis C patients in Switzerland. Swiss Med Wkly 2010 Feb 3.Sgier C, Müllhaupt B, Gerlach T, Moradpour D, Negro F, Malé PJ, Heim MH, Malinverni R, Cerny A, Dufour JF. Effect of antiviral therapy on circulating cytokeratin-18 fragments in patients with chronic hepatitis C. J Viral Hepat 2010;17:845-850.Rauch A, Kutalik Z, Descombes P, Cai T, Di Iulio J, Mueller T, Bochud M, Battegay M, Bernasconi E, Borovicka J, Colombo S, Cerny A, Dufour JF, Furrer H, Günthard HF, Heim M, Hirschel B, Malinverni R, Moradpour D, Müllhaupt B, Witteck A, Beckmann JS, Berg T, Bergmann S, Negro F, Telenti A, Bochud PY; Swiss Hepatitis C Cohort Study; Swiss HIV Cohort Study.Genetic variation in IL28B is associated with chronic hepatitis C and treatment failure: a genome-wide association study. Gastroenterology 2010;138:1338-45, 1345.e1-7.Bochud PY, Cai T, Overbeck K, Bochud M, Dufour JF, Müllhaupt B, Borovicka J,Heim M, Moradpour D, Cerny A, Malinverni R, Francioli P, Negro F; Swiss Hepatitis C Cohort Study Group. Genotype 3 is associated with accelerated fibrosis progression in chronic hepatitis C. J Hepatol 2009;51:655-66.Prasad L, Spicher VM, Negro F, Rickenbach M, Zwahlen M; Swiss Hepatitis C Cohort Study Group. Little evidence that hepatitis C virus leads to a higher risk of mortality in the absence of cirrhosis and excess alcohol intake: the Swiss Hepatitis C Cohort Study. J Viral Hepat 2009;16:644-9.Kuntzen T, Timm J, Berical A, Lennon N, Berlin AM, Young SK, Lee B, Heckerman D, Carlson J, Reyor LL, Kleyman M, McMahon CM, Birch C, Schulze Zur Wiesch J,Ledlie T, Koehrsen M, Kodira C, Roberts AD, Lauer GM, Rosen HR, Bihl F, Cerny A, Spengler U, Liu Z, Kim AY, Xing Y, Schneidewind A, Madey MA, Fleckenstein JF, Park VM, Galagan JE, Nusbaum C, Walker BD, Lake-Bakaar GV, Daar ES, Jacobson IM, Gomperts ED, Edlin BR, Donfield SM, Chung RT, Talal AH, Marion T, Birren BW, Henn MR, Allen TM. Naturally occurring dominant resistance mutations to hepatitis C virus protease and polymerase inhibitors in treatment-naïve patients. Hepatology 2008;48:1769-78.Bruggmann P, Falcato L, Dober S, Helbling B, Keiser O, Negro F, Meili D; Swiss Hepatitis C Cohort Study. Active intravenous drug use during chronic hepatitis C therapy does not reduce sustained virological response rates in adherent patients. J Viral Hepat 2008;15:747-52.Helbling B, Overbeck K, Gonvers JJ, Malinverni R, Dufour JF, Borovicka J, Heim M, Cerny A, Negro F, Bucher S, Rickenbach M, Renner EL, Mullhaupt B; Swiss Hepatitis C Cohort Study. Host- rather than virus-related factors reduce health-related quality of life in hepatitis C virus infection. Gut 2008;57:1597-603.Hora C, Negro F, Leandro G, Oneta CM, Rubbia-Brandt L, Muellhaupt B, Helbling B, Malinverni R, Gonvers JJ, Dufour JF; Swiss Hepatitis C Cohort Study Group. Connective tissue growth factor, steatosis and fibrosis in patients with chronic hepatitis C. Liver Int 2008;28:370-6.Prasad L, Spicher VM, Zwahlen M, Rickenbach M, Helbling B, Negro F; Swiss Hepatitis C Cohort Study Group. Cohort Profile: the Swiss Hepatitis C Cohort Study (SCCS). Int J Epidemiol 2007;36:731-7.Muzzi A, Leandro G, Rubbia-Brandt L, James R, Keiser O, Malinverni R, Dufour JF, Helbling B, Hadengue A, Gonvers JJ, Müllhaupt B, Cerny A, Mondelli MU, Negro F; Swiss Hepatitis C Cohort Study. Insulin resistance is associated with liver fibrosis in non-diabetic chronic hepatitis C patients. J Hepatol 2005;42:41-6.
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